WinBEST-KIT: Windows-based Biochemical Reaction Simulator for Analyzing Complicated Metabolic Pathways

Publications

  1. Tatsuya Sekiguchi, "WinBEST-KIT: Integrated Simulation Environment for Systems Biology", Bulletin of Maebashi Institute of Technology, (in press).
  2. Tatsuya Sekiguchi and Masahiro Okamoto, "WinBEST-KIT for analyzing multilayered biological systems", Proceedings of the 14th Symposium of Biochemical Systems Theory (BST2015), pp.66-67 (2015).
  3. Tatsuya Sekiguchi and Masahiro Okamoto, "WinBEST-KIT for analyzing multilayer and multicellular systems", Proceedings of the 5th IEEE International Conference on Systems Biology (ISB 2011), pp.161-166 (2011).
  4. Mugihito Oshiro, Hideaki Shinto, Yukihiro Tashiro, Noriko Miwa, Tatsuya Sekiguchi, Masahiro Okamoto, Ayaaki Ishizaki and Kenji Sonomoto, "Kinetic Modeling and Sensitivity Analysis of Xylose Metabolism in Lactococcus lactis IO-1", Journal of Bioscience and Bioengineering, 108, pp.376-384 (2009).
  5. Hideaki Shinto, Yukihiro Tashiro, Genta Kobayashi, Tatsuya Sekiguchi, Taizo Hanai, Yuki Kuriya, Masahiro Okamoto and Kenji Sonomoto, "Kinetic Study of Substrate Dependency for Higher Butanol Production in Acetone-Butanol-Ethanol Fermentation", Process Biochemistry, 43(12), pp.1452-1461 (2008).
  6. Hideaki Shinto, Yukihiro Tashiro, Mayu Yamashita, Genta Kobayashi, Tatsuya Sekiguchi, Taizo Hanai, Yuki Kuriya, Masahiro Okamoto and Kenji Sonomoto, "Kinetic Modeling and Sensitivity Analysis of Acetone-Butanol-Ethanol Production", Journal of Biotechnology, 131(1), pp.45-56 (2007).
  7. Tatsuya Sekiguchi and Masahiro Okamoto, "WinBEST-KIT: Windows-based Biochemical Reaction Simulator for Metabolic Pathways", Journal of Bioinformatics and Computational Biology, 4(3), pp.621-638 (2006).
  8. Tatsuya Sekiguchi and Masahiro Okamoto, "System Analysis Using WinBEST-KIT", Software Biology, 5, pp.48-60 (2006).
  9. Tatsuya Sekiguchi, Hideaki Shinto, Yukihiro Tashiro, Genta Kobayashi, Taizo Hanai, Kenji Sonomoto and Masahiro Okamoto, "WinBEST-KIT (Biochemical Reaction Simulator for Analyzing Metabolic Pathways): Application to the System Analysis of Acetone-Butanol-Ethanol Fermentation in Clostridium saccharoperbutylacetonicum", Proceedings of Asia-Pacific Biochemical Engineering Conference 2005 (APBioChEC’05), SYS1-07 (CD-ROM) (2005).
  10. Hideaki Shinto, Yukihiro Tashiro, Mayu Yamashita, Genta Kobayashi, Tatsuya Sekiguchi, Taizo Hanai, Masahiro Okamoto and Kenji Sonomoto, "Kinetic Modeling of Metabolic Pathways in Acetone-Butanol-Ethanol (ABE) Fermentation Using Novel Simulator", Proceedings of The16th International Conference on Genome Informatics, pp.120_1-2 (2005).
  11. Tatsuya Sekiguchi, Jun Yoshimura and Masahiro Okamoto, "WinBEST-KIT: Biochemical Reaction Simulator in Which the Users Can Define and Register Original Mathematical Functions as Reaction Type Library", Proceedings of International Conference on Molecular System Biology 2004 (ICMSB'04), p.73 (2004).
  12. Jun Yoshimura, Tadahiro Shimonobou, Tatsuya Sekiguchi and Masahiro Okamoto, "Development of the parameter-fitting module for web-based biochemical reaction simulator BEST-KIT", Chem-Bio Informatics Journal, 3(3), pp.114-129 (2003).
  13. Masahiro Okamoto,Kenji Sakuraba, Jun Yoshimura, Kouji Tanaka, Jun-ichi Ueno, Masakazu Mori, Tadahiro Shimonobou and Tatsuya Sekiguchi, "Web-based BEST-KIT: Development of Web-based Biochemical Engineering System Analyzing Tool-KIT", Chem-Bio Informatics Journal, 2(1), pp.1-17 (2002).